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Date: 29 August 2016; 08:30 – 12:30 hours
Chairperson: B. Gredler

Theatre Session 01

Experiences from genomic prediction with imputed sequence data in different species
Invited M. Erbe, G. Ni, H. Pausch, R. Emmerling, T.H.E. Meuwissen, D. Cavero, K.-U. Götz and H. Simianer

SNP data management in genomics pipelines
E. Groeneveld

Genomic prediction in cattle based on sequence data
M. Frischknecht, T.H.E. Meuwissen, B. Bapst, F.R. Seefried, C. Flury, D. Garrick, H. Signer-Hasler, C. Stricker,
Intergenomics Consortium, A. Bieber, R. Fries, I. Russ, J. Sölkner, A. Bagnato and B. Gredler

Accurate sequence imputation enables precise QTL mapping in Brown Swiss cattle
M. Frischknecht, H. Pausch, B. Bapst, F.R. Seefried, C. Flury, H. Signer-Hasler, R. Fries, D. Garrick, C. Stricker and
B. Gredler

A family-based imputation algorithm for high and low-coverage sequence data
M. Battagin, G. Gorjanc, S. Gonen, R. Antolin and J.M. Hickey

Efficient identification SNPs in high linkage disequilibrium in large genotype and sequence datasets
M.P.L. Calus and J. Vandenplas

 

Selecting animals for whole genome sequencing: methods optimization and comparison
A. Butty, M. Sargolzaei, F. Miglior and C. Baes

A hidden Markov model to estimate inbreeding from whole genome sequence data
T. Druet and M. Gautier

Accounting for read depth in the analysis of genotyping-by-sequencing data
K.G. Dodds, J.C. McEwan, T.P. Bilton, R. Brauning, R.M. Anderson, T.C. Van Stijn, T. Kristjánsson and S.M. Clarke

SNP-effects underlying GBLUP depend on the definition of the genomic relationship matrix
A.C. Bouwman, B.J. Hayes and M.P.L. Calus

Functional annotation of CNV breakpoints in Holstein-Friesian cows
J. Szyda, M. Mielczarek, M. Fraszczak, R. Giannico, G. Minozzi, E. Nicolazzi and K. Wojdak-Maksymiec

NGS-based analysis of copy number variations in various cattle breeds
M. Mielczarek, M. Frąszczak, E.L. Nicolazzi, G. Minozzi, H. Schwarzenbacher, C. Egger-Danner, D. Vicario, F. Seefried,
A. Rossoni, T. Solberg, L. Varona, C. Diaz, C. Ferrandi, R. Giannico, J.L. Williams, J. Woolliams and J. Szyda

 

Poster Session 01

Genome-wide association study in Brown Swiss for udder traits based on sequence data
M. Frischknecht, C. Flury, B. Bapst, F.R. Seefried, H. Signer-Hasler, D. Garrick, C. Stricker, Intergenomics Consortium,
A. Bagnato, A. Bieber, R. Fries, I. Russ, J. Sölkner and B. Gredler

Correlation between DNA methylation in CHFR gene promoter and economic traits in J. Black cattle
Y. Suda, E. Kobayashi, Y. Saito, K. Kato and K. Suzuki

Transcriptome profile analysis of ovarian tissues highlights steroids biosynthetic genes in ewes
H. Ghaderi, A. Masoudi and B. Arefnejad

The analysis of CNV regions in Holstein-Friesian cows
M. Frąszczak, M. Mielczarek, E.L. Nicolazzi, G. Minozzi, K. Giannico, K. Wojdak-Maksymiec and J. Szyda

Genome-wide association study in Brown Swiss for fertility traits based on sequence data
M. Frischknecht, B. Bapst, C. Flury, F.R. Seefried, H. Signer-Hasler, D. Garrick, C. Stricker, Intergenomics Consortium,
R. Fries, I. Russ, J. Sölkner, A. Bieber, A. Bagnato and B. Gredler

Genome-wide differential DNA methylation patterns between Iberian & tropical adapted Creole bovines
N. Sevane, R. Martinez, P. Orozco-Terwengel and M.W. Bruford

Functional SNP & splice variants in pigs with divergent lipid phenotypes using genome-wide analysis
T. Cardoso, M. Amills, R. Gonzalez-Prendes, R. Quintanilla and A. Canovas