Session 14. Sequence based analysis

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Date: 25 August 2014; 14:00 – 18:00 hours
Chairperson: J. Jensen

Theatre Session 14

14.00 Persistence and competition in the human gut microbiome
H.B. Nielsen and D. Plichta

14.30 Use of full genome sequence information in fine mapping of QTL
Invited G. Sahana

15.00 Systems genetics analysis of RNA-Seq data to unravel the genetics of obesity using a porcine model
L.J.A. Kogelman, D.V. Zhernakova, H.-J. Westra, S. Cirera, M. Fredholm, L. Franke and H.N. Kadarmideen

15.15 Systems biology and RNA-Seq analyses to detect biomarkers for metabolic syndrome in a porcine model
P. Mantas, L.J.A. Kogelman, S. Cirera, M. Fredholm and H.N. Kadarmideen

15.30 Analysis of the ovine homolog of the T-locus as a candidate gene for short tail phenotype
C. Weimann, K. Fleck and G. Erhardt


16.15 Sequence-based prediction for a complex trait in Drosophila reveals sex-differentiated epistasis
H. Simianer, U. Ober, W. Huang, M. Magwire, M. Schlather and T.F.C. Mackay

16.30 Sequence-based partitioning of genomic variance using prior biological information
P. Sørensen, S.M. Edwards, P.M. Sarup and D.A. Sorensen

16.45 Prediction of sequence-based genomic breeding values in Fleckvieh cattle
M. Erbe, H. Pausch, R. Emmerling, C. Edel, K.-U. Götz, R. Fries, T.H.E. Meuwissen and H. Simianer

17.00 Sequence differentiation of five European dairy cattle breeds
B. Guldbrandtsen and D. Boichard

17.15 The effect of read coverage in whole genome sequencing data
C.F. Baes, P. Von Rohr, M.A. Dolezal, E. Fritz-Waters, J.E. Koltes, B. Bapst, C. Flury, H. Signer-Hasler, C. Stricker, R. Fernando, F. Schmitz-Hsu, D.J. Garrick, J.M. Reecy and B. Gredler

17.30 Imputation from 60K SNP data to whole-genome level in Danish Landrace and Duroc pigs
P.S. Sarup, B.G. Guldbrandtsen, B.N. Nielsen, P.S. Sørensen and J.J. Jensen


Poster Session  14

Genome variability analysis through whole genome sequencing of a highly inbred strain of Iberian pig
A.I. Fernández, A. Fernández, M. Saura, M. Pérez-Enciso and B. Villanueva

Analysis of putatively deleterious alleles in German Fleckvieh by whole genome-resequencing
S. Jansen, C. Wurmser, H. Pausch and R. Fries

Optimizing NGS data analysis pipelines – comparison of alignment and variant calling tools
M. Mielczarek, J. Szyda and B. Guldbrandtsen